Moose-dev September 2013

moose-dev@list.inf.unibe.ch

30 participants
148 discussions

Hapax/CodeFu changes and example script
by Hernán Morales Durand 03 Oct '13

03 Oct '13

Hi guys, For those working in information retrieval, for example for doing td-idf ranking, you can find adapted packages: "Hapax" and "CodeFu" in the BioSmalltalk repository http://ss3.gemstone.com/ss/BioSmalltalk.html . I have translated some VW specific code to Pharo 1.4 (under Windows requires the ProcessWrapper package) and adapted some Hapax methods to work with corpus in different languages. This is an example script for a corpus in Spanish: | corpus tdm documents | corpus := HXSpanishCorpus new. documents := 'el río Danubio pasa por Viena, su color es azul el caudal de un río asciende en Invierno el río Rhin y el río Danubio tienen mucho caudal si un río es navegable, es porque tiene mucho caudal'. documents lines doWithIndex: [: doc : index | corpus addDocument: index asString with: (Terms new addString: doc using: CamelcaseScanner; yourself)]. corpus removeStopwords. corpus stemAll. tdm := TermDocumentMatrix on: corpus. Feel free to integrate to any repository. If you want to add a language just see methods with selectors including "spanish". Cheers, Hernán

5 8

Bug Model
by Tommaso 03 Oct '13

03 Oct '13

Hello, I'm Tommaso Dal Sasso, PhD student in Lugano. I was talking with Stef at ESUG two weeks ago, and since I am working with bug reports and bug tracking systems, he suggested me to look at the bug report model in Moose. Can anybody tell me where to find information about that? Since I'm planning a visit in Lille, I was also suggested to ask here to find the appropriate date (I hope this mailing list is the right place). Which period would be more suitable? I think that the best would be near a Pharo Sprint. Thank you! Tommaso

5 6

Code functionality assessment
by Natalia Tymchuk 02 Oct '13

02 Oct '13

Hello, I wrote another blog post concerning my project on Google Summer of Code, and there's how I assessed the results using Graph-ET. http://nataliatymchuk.blogspot.com/2013/09/code-functionality-assessment.ht… Best regard, Natalia

4 7

Build failed in Jenkins: moose-latest-dev-4.8 #1200
by admin＠moosetechnology.org 01 Oct '13

01 Oct '13

See <https://ci.inria.fr/moose/job/moose-latest-dev-4.8/1200/> ------------------------------------------ Started by upstream project "graph-et" build number 41 originally caused by: [URLTrigger] A change within the response URL invocation (log) Building remotely on moose-ubuntu1204-dualproc-i386 in workspace <https://ci.inria.fr/moose/job/moose-latest-dev-4.8/ws/> Deleting project workspace... done [moose-latest-dev-4.8] $ /bin/sh -xe /tmp/hudson8177218792157239676.sh + wget --quiet -O - http://get.pharo.org/20+vmLatest + bash Downloading the latest 20 Image: http://files.pharo.org/image/20/latest.zip Pharo.image Downloading the latest pharoVM: http://files.pharo.org/vm/pharo/linux/latest.zip pharo-vm/pharo Downloading PharoV10.sources: http://files.pharo.org/sources//PharoV10.sources.zip Downloading PharoV20.sources: http://files.pharo.org/sources//PharoV20.sources.zip Creating starter scripts pharo and pharo-ui + ./pharo Pharo.image save moose-latest-dev-4.8 + REPO=http://www.smalltalkhub.com/mc/Moose/Moose/main + ./pharo moose-latest-dev-4.8.image config http://www.smalltalkhub.com/mc/Moose/Moose/main ConfigurationOfMoose --install=development [31m[33m =============================================================================== Notice: Installing ConfigurationOfMoose development =============================================================================== [0m[0m[31m[33m *** Warning: Warning: This package depends on the following classes: StackDebugAction RunToHereDebugAction CreateMessageDebugAction You must resolve these dependencies before you will be able to load these definitions: ACDStackDebugAction gtStackActionsFor: appliesToContext: defaultIcon gtActionType defaultIcon gtACDReceiverActionTypeFor: gtActionType gtStackActionsFor: [0m[0m+ ./pharo moose-latest-dev-4.8.image mooseimagesetup --signature=https://ci.inria.fr/moose/job/moose-latest-dev-4.8/1200/ + ./pharo moose-latest-dev-4.8.image moosetest --junit-xml-output [31m[33m =============================================================================== Notice: Running tests in 140 Packages =============================================================================== [0m[0m[31mError: index out of range [0mTabSelectorMorph(Object)>>error: TabSelectorMorph(Morph)>>privateAddAllMorphs:atIndex: TabSelectorMorph(Morph)>>addAllMorphs: TabSelectorMorph>>updateTabs TabSelectorMorph>>extent: TabSelectorMorph(Morph)>>bounds: TabSelectorMorph(Morph)>>layoutInBounds: TableLayout>>layoutLeftToRight:in: TableLayout>>layout:in: PanelMorph(Morph)>>doLayoutIn: PanelMorph(Morph)>>fullBounds in Block: [self doLayoutIn: self layoutBounds] BlockClosure>>on:do: PanelMorph(Morph)>>fullBounds LazyTabGroupMorph(Morph)>>submorphBounds in Block: [:m | | subBox | m visible... Array(SequenceableCollection)>>do: LazyTabGroupMorph(Morph)>>submorphBounds LazyTabGroupMorph(Morph)>>privateFullBounds LazyTabGroupMorph(Morph)>>doLayoutIn: LazyTabGroupMorph(Morph)>>fullBounds in Block: [self doLayoutIn: self layoutBounds] BlockClosure>>on:do: LazyTabGroupMorph(Morph)>>fullBounds LazyTabGroupMorph(Morph)>>layoutProportionallyIn: ProportionalLayout>>layout:in: in Block: [:m | m layoutProportionallyIn: newBounds] Array(SequenceableCollection)>>do: PanelMorph(Morph)>>submorphsDo: ProportionalLayout>>layout:in: PanelMorph(Morph)>>doLayoutIn: PanelMorph(Morph)>>fullBounds in Block: [self doLayoutIn: self layoutBounds] BlockClosure>>on:do: PanelMorph(Morph)>>fullBounds [0mBuild step 'Execute shell' marked build as failure Archiving artifacts Recording test results ERROR: Failed to archive test reports hudson.util.IOException2: remote file operation failed: <https://ci.inria.fr/moose/job/moose-latest-dev-4.8/ws/> at hudson.remoting.Channel@4f7a95c6:moose-ubuntu1204-dualproc-i386 at hudson.FilePath.act(FilePath.java:905) at hudson.FilePath.act(FilePath.java:882) at hudson.tasks.junit.JUnitParser.parse(JUnitParser.java:87) at hudson.tasks.junit.JUnitResultArchiver.parse(JUnitResultArchiver.java:121) at hudson.tasks.junit.JUnitResultArchiver.perform(JUnitResultArchiver.java:133) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:804) at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:776) at hudson.model.Build$BuildExecution.post2(Build.java:183) at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:726) at hudson.model.Run.execute(Run.java:1628) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46) at hudson.model.ResourceController.execute(ResourceController.java:88) at hudson.model.Executor.run(Executor.java:247) Caused by: hudson.util.IOException2: Failed to read <https://ci.inria.fr/moose/job/moose-latest-dev-4.8/ws/Glamour-Tests-Morphic…> at hudson.tasks.junit.TestResult.parse(TestResult.java:291) at hudson.tasks.junit.TestResult.parsePossiblyEmpty(TestResult.java:230) at hudson.tasks.junit.TestResult.parse(TestResult.java:165) at hudson.tasks.junit.TestResult.parse(TestResult.java:148) at hudson.tasks.junit.TestResult.<init>(TestResult.java:124) at hudson.tasks.junit.JUnitParser$ParseResultCallable.invoke(JUnitParser.java:117) at hudson.tasks.junit.JUnitParser$ParseResultCallable.invoke(JUnitParser.java:90) at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2417) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:326) at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334) at java.util.concurrent.FutureTask.run(FutureTask.java:166) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603) at java.lang.Thread.run(Thread.java:679) Caused by: org.dom4j.DocumentException: Error on line 107 of document file://<https://ci.inria.fr/moose/job/moose-latest-dev-4.8/ws/Glamour-Tests-Morphic…> : XML document structures must start and end within the same entity. Nested exception: XML document structures must start and end within the same entity. at org.dom4j.io.SAXReader.read(SAXReader.java:482) at org.dom4j.io.SAXReader.read(SAXReader.java:264) at hudson.tasks.junit.SuiteResult.parse(SuiteResult.java:130) at hudson.tasks.junit.TestResult.parse(TestResult.java:274) ... 16 more Caused by: org.xml.sax.SAXParseException; systemId: file://<https://ci.inria.fr/moose/job/moose-latest-dev-4.8/ws/Glamour-Tests-Morphic…;> lineNumber: 107; columnNumber: 1; XML document structures must start and end within the same entity. at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:198) at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.fatalError(ErrorHandlerWrapper.java:177) at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:391) at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1404) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.endEntity(XMLDocumentFragmentScannerImpl.java:882) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.endEntity(XMLDocumentScannerImpl.java:582) at com.sun.org.apache.xerces.internal.impl.XMLEntityManager.endEntity(XMLEntityManager.java:1370) at com.sun.org.apache.xerces.internal.impl.XMLEntityScanner.load(XMLEntityScanner.java:1740) at com.sun.org.apache.xerces.internal.impl.XMLEntityScanner.skipChar(XMLEntityScanner.java:1393) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2769) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:625) at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(XMLNSDocumentScannerImpl.java:116) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:488) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:819) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:748) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:123) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1208) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:525) at org.dom4j.io.SAXReader.read(SAXReader.java:465) ... 19 more

3 7

Dynamically adding nodes to Roassal
by roberto.minelli＠usi.ch 01 Oct '13

01 Oct '13

Hi, I am playing around with Roassal (in particular, a tree map) and I have a question: Is there a way to dynamically adding nodes? I mean, once the view is generated to update the #nodes by adding a new node (and associations as well, i.e., edges) and have the visualization re- At the moment I managed to have something *almost* working, but the behavior of the ROTreeMapLayout is not clear to me. Using the ROMondrianViewBuilder I can specify the size of the Tree map, but then I am not able to dynamically add nodes. Well, at least I did not manage to do that. So I moved to pure Roassal, as suggested by Alejandro. Here's how my actual code looks like: http://ws.stfx.eu/CFM522Z9X3ES I am a beginner with Roassal, so I spend some time to figure out how to draw the tree map in this way. I did not really quite understand why I have to add the ROBox new size: 200 to the ROElement, but I'll figure it out. The thing is when I try to add the new node. Following, again, Alejandro's advice I am writing something like: "I add a new node, re-layout the view, and signalUpdate" rawView add: ((ROElement on: 10) + (ROBox new size: 200)). (ROTreeMapLayout withWeightBlock: [ :e | e model ]) applyOn: rawView elements. rawView signalUpdate . The result is quite strange, the view is indeed updated but I cannot understand why all sizes are messed up. I think that once I apply the layout, the "elements" array is actually changed (i.e., sizes, parents, resize strategy). Am I correct? is it the correct behavior? My questions, in short are: How can I fix the overall size of the tree map? Am I doing everything correct till now? Thanks again for your help, Roby

3 5

how can I change the popup?
by Stéphane Ducasse 29 Sep '13

29 Sep '13

hi guys I would like to remove the namespace in the name Stef

3 5

edgesFrom: generates a DNU
by Stéphane Ducasse 29 Sep '13

29 Sep '13

view := ROMondrianViewBuilder view: ROView new. luClasses := luModel allModelClasses. view nodes: luClasses. view shape rectangle size: [ :cls | cls queryAllOutgoingInvocations size ]. view edgesFrom: #superclass. view treeLayout. view open When I execute the following code I get setEdgesAttachPoint: attachPointClass self edges do: [ :ed | (ed isShapedAs: ROShape) ifTrue: [ (ed getShape: ROShape) attachPoint: attachPointClass instance ] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ifFalse: [ ROLine new color: self shape color; attachPoint: attachPointClass instance ] ]

4 5

userDefinedEdges
by Stéphane Ducasse 29 Sep '13

29 Sep '13

Hi I was following an exercise written by alex and the following code does not work | superclassEdges | luModel := (MooseModel allInstances last). luClasses := luModel allModelClasses. view shape rectangle size: [ :cls | cls queryAllOutgoingInvocations size ]. view nodes: luClasses. superclassEdges := view edgesFrom: #superclass. view treeLayout userDefinedEdges: superclassEdges. view shape line color: Color red. view edges: luClasses from: #yourself toAll: [ :cls | cls queryAllOutgoingInvocations atClassScope ] edgesFrom: raises an error several candidates. and I do not understand why. Stef

3 4

using log scale?
by Stéphane Ducasse 29 Sep '13

29 Sep '13

Hi how do I use a log scale? Stef

2 2

I removed the (namespace) in the namespace name because I got
by Stéphane Ducasse 28 Sep '13

28 Sep '13

something ugly like org (namespapce) :: apache (namespace)…. when inspecting class and namespace. So I do not get really the logic to have namespace written in between. Stef

1 0

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Moose-dev September 2013