hi guys, one of my students encountered a case where FAMIXMethod#invokingMethods is not correctly set. i wonder whether that is a moose problem or an infamix one. anybody knows about this? the original message is at the end of this mail. thanks, -- Dr. Mircea Lungu Researcher Software Composition Group University of Bern I assumed that FAMIXMethod >> invokingMethods would return all methods that invoke the method represented by the FAMIXMethod instance, this doesn't seem to be the case. I created an mse file with inFamix from the code in svn at http://svn.apache.org/repos/asf/incubator/stanbol/trunk/enhancer/engines/ke… The class org.apache.stanbol.enhancer.engines.keywordextraction.linking.EntityLinker has both private methods with an empty collection of invokingMethod as well as with a non-empty one: - The method getLinkedEntityTypes has an empty collection of invokingMethods even though the method is in fact invoked: public void process(){ ... if(linkedEntity == null){ linkedEntity = new LinkedEntity(selectedText, suggestions, getLinkedEntityTypes(suggestions.subList(0, 1))); linkedEntities.put(selectedText, linkedEntity); } By contrast in the same class - porcessRedirects has {process} as collection of invokingMethods, where processRedirects is invokes as follows: public void process(){ ... if(config.getRedirectProcessingMode() != RedirectProcessingMode.IGNORE){ for(Suggestion suggestion : suggestions){ processRedirects(suggestion); } } All the method I've looked at with an empty collection of inkingMethods in fact had at least one invokation, I tried to make a famix model for just the class EntityLinker as this class has both private method with empty as well as with a non-empty set of ivokers according to Moose, I hoped that with a small mse file it would be easier to analyze the problem. Unfortunately I didn't manage to create such an mse model, I'm getting the following exception message running `inFamix -lang java -path source -mse test.mse`: java.lang.StringIndexOutOfBoundsException: String index out of range: -1 at java.lang.String.substring(String.java:1931) at java.lang.String.substring(String.java:1904) at com.intooitus.infusion.batch.JavaBatchModelBuilder.compute(JavaBatchModelBuilder.java:43) at com.intooitus.infusion.batch.BatchApplication.run(BatchApplication.java:135) at com.intooitus.infusion.batch.BatchApplication.start(BatchApplication.java:43) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:344) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:622) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:577) at org.eclipse.equinox.launcher.Main.run(Main.java:1410) Unfortunately as inFamix is not open source and because of section 2.3 of the SLA it's hard for me to tackle this problem so I would appreciate some help. _______________________________________________ Moose-dev mailing list Moose-dev(a)iam.unibe.ch https://www.iam.unibe.ch/mailman/listinfo/moose-dev

Hi guys and thanks for the prompt responses! Alex, I tried to use the Chef methods but nothing changes. Then I tried to use inFusion instead of inFamix. It generates a model file which is larger than inFamix but still this particular invocation is not in it. Then Fabrizio had the great idea of trying an older version of inFusion and that one works: the invocation from process to getLinkedEntityTypes is in the model now. This means that the lastest version of the inFamix still needs improvements. (by the way, where should I report this? i don't see any mailinglist or forum related to intooitus tools). I also tried verveinej and I get an error that I will attach to the end of this mail. Cheers, M. The following is what I obtain if I run VerveineJ on the aforementioned project feivel:verveine.extractor.java mircea$ ./verveinej.sh ~/Teaching/SDE-Project/case-studies/keywordextraction/src/ ~/Desktop/vj-kwx.mse ./lib/akuhn-util-r28011.jar:./lib/fame-good.jar:./lib/fame.jar:./lib/famix.jar:./lib/junit.jar:./lib/org.eclipse.core.contenttype_3.4.100.v20110423-0524.jar:./lib/org.eclipse.core.jobs_3.5.100.v20110404.jar:./lib/org.eclipse.core.resources_3.7.100.v20110510-0712.jar:./lib/org.eclipse.core.runtime_3.7.0.v20110110.jar:./lib/org.eclipse.equinox.common_3.6.0.v20110523.jar:./lib/org.eclipse.equinox.preferences_3.4.1.R37x_v20110725.jar:./lib/org.eclipse.jdt.core_3.7.1.v_B76_R37x.jar:./lib/org.eclipse.osgi_3.7.1.R37x_v20110808-1106.jar:./lib/org.eclipse.text_3.5.0.v20100601-1300.jar:./lib/org.hamcrest.core_1.1.0.v20090501071000.jar:./lib/verveine.core.jar:./lib/verveine.extractor.java.jar VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/engine/KeywordLinkingEngine.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/impl/ProcessingState.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/AnalysedContent.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/EntityLinker.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/EntityLinkerConfig.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/EntitySearcher.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/EntityhubSearcher.java *** VerveineJ visitor got exception: 'fr.inria.verveine.core.gen.famix.Type cannot be cast to fr.inria.verveine.core.gen.famix.Class' while processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/EntityhubSearcher.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/EntitySearcherUtils.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/OpenNlpAnalysedContentFactory.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/ReferencedSiteSearcher.java *** VerveineJ visitor got exception: 'fr.inria.verveine.core.gen.famix.Type cannot be cast to fr.inria.verveine.core.gen.famix.Class' while processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/ReferencedSiteSearcher.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/TrackingEntitySearcher.java *** VerveineJ visitor got exception: 'fr.inria.verveine.core.gen.famix.Type cannot be cast to fr.inria.verveine.core.gen.famix.Class' while processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/impl/TrackingEntitySearcher.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/LinkedEntity.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/main/java/org/apache/stanbol/enhancer/engines/keywordextraction/linking/Suggestion.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/test/java/org/apache/stanbol/enhancer/engines/keywordextraction/impl/ClasspathDataFileProvider.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/test/java/org/apache/stanbol/enhancer/engines/keywordextraction/impl/MockComponentContext.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/test/java/org/apache/stanbol/enhancer/engines/keywordextraction/impl/TestSearcherImpl.java VerveineJ processing file: /Users/mircea/Teaching/SDE-Project/case-studies/keywordextraction/src/test/java/org/apache/stanbol/enhancer/engines/keywordextraction/TestTaxonomyLinker.java On Mon, Dec 5, 2011 at 7:42 AM, Tudor Girba <tudor(a)tudorgirba.com> wrote: > Hi Mircea, > > Thanks for the report. This looks troubling, so it is something we > need to double check. > > However, I cannot reproduce the problem because something seems to > be wrong currently with svn.apache.org. > > Regarding the error of running inFamix, it might probably due to a > trailing "/" in the path string, or that the path is to a file. The > former problem should be fixed in the last release of inFamix. The > latter is not supposed to work at all because it expects a folder. > > In any case, it would be useful to also try with verveineJ: > http://www.themoosebook.org/book/externals/import-export/external/verveineJ > > Doru > > > On 4 Dec 2011, at 00:02, Mircea Filip Lungu wrote: > >> hi guys, >> >> one of my students encountered a case where >> FAMIXMethod#invokingMethods is not correctly set. i wonder whether >> that is a moose problem or an infamix one. anybody knows about >> this? >> the original message is at the end of this mail. >> >> thanks, >> >> -- >> Dr. Mircea Lungu >> Researcher >> Software Composition Group >> University of Bern >> >> >> >> I assumed that FAMIXMethod >> invokingMethods would return all >> methods >> that invoke the method represented by the FAMIXMethod instance, >> this >> doesn't seem to be the case. >> >> >> I created an mse file with inFamix from the code in svn at >> http://svn.apache.org/repos/asf/incubator/stanbol/trunk/enhancer/engines/ke… >> >> >> The class >> org.apache.stanbol.enhancer.engines.keywordextraction.linking.EntityLinker >> has both private methods with an empty collection of >> invokingMethod as >> well as with a non-empty one: >> >> - The method getLinkedEntityTypes has an empty collection of >> invokingMethods >> >> even though the method is in fact invoked: >> >> public void process(){ >> ... >> if(linkedEntity == null){ >> linkedEntity = new LinkedEntity(selectedText, >> suggestions, getLinkedEntityTypes(suggestions.subList(0, 1))); >> linkedEntities.put(selectedText, linkedEntity); >> } >> >> >> By contrast in the same class >> >> - porcessRedirects has {process} as collection of invokingMethods, >> where processRedirects is invokes as follows: >> >> public void process(){ >> ... >> if(config.getRedirectProcessingMode() != >> RedirectProcessingMode.IGNORE){ >> for(Suggestion suggestion : suggestions){ >> processRedirects(suggestion); >> } >> } >> >> All the method I've looked at with an empty collection of >> inkingMethods in fact had at least one invokation, I tried to make >> a >> famix model for just the class EntityLinker as this class has both >> private method with empty as well as with a non-empty set of >> ivokers >> according to Moose, I hoped that with a small mse file it would be >> easier to analyze the problem. >> >> Unfortunately I didn't manage to create such an mse model, I'm >> getting >> the following exception message running `inFamix -lang java -path >> source -mse test.mse`: >> >> java.lang.StringIndexOutOfBoundsException: String index out of >> range: -1 >> at java.lang.String.substring(String.java:1931) >> at java.lang.String.substring(String.java:1904) >> at >> com.intooitus.infusion.batch.JavaBatchModelBuilder.compute(JavaBatchModelBuilder.java:43) >> at >> com.intooitus.infusion.batch.BatchApplication.run(BatchApplication.java:135) >> at >> com.intooitus.infusion.batch.BatchApplication.start(BatchApplication.java:43) >> at >> org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) >> at >> org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110) >> at >> org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79) >> at >> org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:344) >> at >> org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >> at java.lang.reflect.Method.invoke(Method.java:597) >> at >> org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:622) >> at org.eclipse.equinox.launcher.Main.basicRun(Main.java:577) >> at org.eclipse.equinox.launcher.Main.run(Main.java:1410) >> >> Unfortunately as inFamix is not open source and because of section >> 2.3 >> of the SLA it's hard for me to tackle this problem so I would >> appreciate some help. >> _______________________________________________ >> Moose-dev mailing list >> Moose-dev(a)iam.unibe.ch >> https://www.iam.unibe.ch/mailman/listinfo/moose-dev > > -- > www.tudorgirba.com > > "We can create beautiful models in a vacuum. > But, to get them effective we have to deal with the inconvenience > of reality." > > > _______________________________________________ > Moose-dev mailing list > Moose-dev(a)iam.unibe.ch > https://www.iam.unibe.ch/mailman/listinfo/moose-dev _______________________________________________ Moose-dev mailing list Moose-dev(a)iam.unibe.ch https://www.iam.unibe.ch/mailman/listinfo/moose-dev