[Moose-dev] Re: Trying to display local ancestry inference with Grapher

-- _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;: Alexandre Bergel http://www.bergel.eu ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;. > On Nov 19, 2015, at 11:18 AM, Hernán Morales Durand hernan.morales@gmail.com wrote: > > Hi Alex, > > Yes but I just installed the version available in the Configuration Browser. I thought it was the latest one, but then I've checked in Pharo 5 the Catalog Browser seems to install another more updated version. > > Cheers, > > Hernán > > > 2015-11-19 9:31 GMT-03:00 Alexandre Bergel <alexandre.bergel@me.com mailto:alexandre.bergel@me.com>: > Don’t you want to consider in moving to the last version of Roassal? > > Alexandre > -- > _,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;: > Alexandre Bergel http://www.bergel.eu http://www.bergel.eu/ > ^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;._,.;:~^~:;. > > > >> On Nov 18, 2015, at 6:15 PM, Hernán Morales Durand <hernan.morales@gmail.com mailto:hernan.morales@gmail.com> wrote: >> >> Hello, >> >> I am using Roassal2 (StephanEggermont.40) in Pharo 4. The attached picture displays a common visualization for inference of local ancestry in population genetics, I have attached what I am getting now with Grapher. Input data for such visualization is for example: >> >> 1:454 2:1488 1:2546 2:5711 1:14253 2:24411 1:31490 0:41585 >> >> (those are like Associations with key 0, 1 or 2 and value 454, 1488, ... etc) >> >> In the attached picture >> >> Min X is 0 and >> Max X is 41500 >> >> so the X axis (chromosome positions) is rendered in intervals between 10000. >> >> This is what I am trying now (code is commented where I tried to configure X axis interval) >> >> | b intv | >> >> intv := 0 to: 40000 by: 10000. >> b := RTGrapher new. >> >> ds := RTStackedDataSet new. >> ds dotShape color: Color red. >> ds >> points: #(1 2 1 2 1 2 1 0); >> x: intv. "????" >> ds barShape width: 99; color: Color red. >> "b >> minX: 0; >> maxX: 41500." >> b add: ds. >> b axisX noLabel; noTick. b axisY noDecimal. >> b build. >> >> I have some questions: >> >> 1) There is support to add an interval label to the X axis but preserving the space relation with the real chromosome position (the X axis) for the data (points in my example = 454 1488 2546 5711 14253 24411 31490 41585)? >> >> 2) How to clear the bar filling? >> >> Any advice or help would be really nice. >> >> Hernán >> >> >> <LocalAncestry.jpg><Grapher_Test1.png>_______________________________________________ >> Moose-dev mailing list >> Moose-dev@list.inf.unibe.ch mailto:Moose-dev@list.inf.unibe.ch >> https://www.list.inf.unibe.ch/listinfo/moose-dev https://www.list.inf.unibe.ch/listinfo/moose-dev > > > _______________________________________________ > Moose-dev mailing list > Moose-dev@list.inf.unibe.ch mailto:Moose-dev@list.inf.unibe.ch > https://www.list.inf.unibe.ch/listinfo/moose-dev https://www.list.inf.unibe.ch/listinfo/moose-dev > > > _______________________________________________ > Moose-dev mailing list > Moose-dev@list.inf.unibe.ch > https://www.list.inf.unibe.ch/listinfo/moose-dev